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Genome Sequencing (Bioinformatics II)
МООК
en
Английский
Subtitles available
20 h
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- Self-paced
- Free Access
- Fee-based Certificate
- 5 Sequences
- Introductive Level
- Субтитры доступны на Chinese
Course details
Syllabus
- Week 1 - Week 1: Introduction to Genome Sequencing
Welcome to class!
This course will focus on two questions at the forefront of modern computational biology, along with the algorithmic approaches we will use to solve them in parentheses:
- Weeks 1-2: How Do We Assemble Genomes? (Grap...
- Week 2 - Week 2: Applying Euler's Theorem to Assemble Genomes
Welcome to Week 2 of class!
This week in class, we will see how a 300 year-old mathematical theorem will help us assemble a genome from millions of tiny pieces of DNA.
- Week 3 - Week 3: Sequencing Antibiotics
Welcome to Week 3 of class!
This week, we begin a new chapter, titled "How Do We Sequence Antibiotics?" In this chapter, we will learn how to determine the amino acid sequences making up antibiotics using brute force algorithms.
B...
- Week 4 - Week 4: From Ideal to Real Spectra for Antibiotics Sequencing
Welcome to Week 4 of class!
Last week, we discussed how to sequence an antibiotic peptide from an ideal spectrum. This week, we will see how to develop more sophisticated algorithms for antibiotic peptide sequencing that are able to handle spectra w...
- Week 5 - Week 5: Bioinformatics Application Challenge!
Welcome to Week 5 of class!This week, we will see how to apply genome assembly tools to sequencing data from a dangerous pathogenic bacterium.
Prerequisite
None.
Instructors
Pavel Pevzner
Professor
Department of Computer Science and Engineering
Phillip Compeau
Visiting Researcher
Department of Computer Science & Engineering
Editor
L' Université de Californie à San Diego est une université publique de recherche sur les concessions de terres à San Diego, en Californie. Établi en 1960 près de la Scripps Institution of Oceanography préexistante, l'UC San Diego est le plus méridional des dix campus de l' Université de Californie et offre plus de 200 programmes menant à un diplôme de premier cycle et des cycles supérieurs, recrutant 33 096 étudiants de premier cycle et 9 872 étudiants des cycles supérieurs.
L'UC San Diego est considérée comme l'une des meilleures universités au monde. Plusieurs publications ont classé les départements de sciences biologiques et d'informatique de l'UC San Diego parmi les 10 meilleurs au monde.
Platform
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