Algorithms and Data Structures Capstone
list 4 sequencias
assignment Nível: Intermediário
chat_bubble_outline Idioma: Inglês
card_giftcard 320 pontos
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Informações principais

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timer 32 total de horas

Sobre o conteúdo

Building a fully-fledged algorithm to assemble genomes from DNA fragments on a real dataset is an enormous challenge with major demand in the multi-billion dollar biotech industry.

In this capstone project, we will take the training wheels off and let you design your own optimized software program for genome sequencing.

This big data challenge will cover the entire MicroMasters program. After a brief introduction to the steps required to build a genome assembler, we will let you take steps on your own to start working with real data taken from a sequencing machine and see if you can design genome assembly software that can compete with popular software used in hundreds of sequencing labs around the world every day.

  • Graph algorithms
  • Algorithms for genome assembly
  • Algorithm optimization

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Pré-requisito

Basic knowledge of:

  • at least one programming language: loops, arrays, stacks, recursion.
  • mathematics: proof by induction, proof by contradiction.

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Programa de estudos

This big data challenge will cover the entire program. After a brief introduction to the steps required to build a genome assembler, we will let you take steps on your own to start working with real data taken from a sequencing machine and see if you can design genome assembly software that can compete with popular software used in hundreds of sequencing labs around the world every day.

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Instrutores

Pavel Pevzner
Ronald R. Taylor Professor of Computer Science
The University of California, San Diego

Phillip Compeau
Assistant Teaching Professor
Carnegie Mellon University

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Criador do conteúdo

The University of California, San Diego
The University of California, San Diego
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Plataforma

Edx

EdX est une plateforme d'apprentissage en ligne (dite FLOT ou MOOC). Elle héberge et met gratuitement à disposition des cours en ligne de niveau universitaire à travers le monde entier. Elle mène également des recherches sur l'apprentissage en ligne et la façon dont les utilisateurs utilisent celle-ci. Elle est à but non lucratif et la plateforme utilise un logiciel open source.

EdX a été fondée par le Massachusetts Institute of Technology et par l'université Harvard en mai 2012. En 2014, environ 50 écoles, associations et organisations internationales offrent ou projettent d'offrir des cours sur EdX. En juillet 2014, elle avait plus de 2,5 millions d'utilisateurs suivant plus de 200 cours en ligne.

Les deux universités américaines qui financent la plateforme ont investi 60 millions USD dans son développement. La plateforme France Université Numérique utilise la technologie openedX, supportée par Google.

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