Graph Algorithms in Genome Sequencing

Graph Algorithms in Genome Sequencing

Course
en
English
24 h
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  • From www.edx.org
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  • Self-paced
  • Free Access
  • Fee-based Certificate
More info
  • 3 Sequences
  • Intermediate Level

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Course details

Syllabus

Week 1: Introduction to Genome Sequencing and Graphs
Introduction to the basics of genome sequencing, and first attempts to model this problem using graphs.

Weeks 2 and 3: Assembling Genomes from Tiny Fragments
Applying an Eulerian path approach to assemble a genome from small pieces of DNA, and adapting this theoretical solution to practical considerations.

Prerequisite

Basic knowledge of:

  • at least one programming language: loops, arrays, stacks, recursion.
  • mathematics: proof by induction, proof by contradiction.

Instructors

Pavel Pevzner
Ronald R. Taylor Professor of Computer Science
The University of California, San Diego

Phillip Compeau
Assistant Teaching Professor
Carnegie Mellon University

Editor

The University of California, San Diego

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